Articles producció científicaCiències Mèdiques Bàsiques

Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex

  • Dades identificatives

    Identificador:  imarina:9231690
    Handle: https://hdl.handle.net/20.500.11797/imarina9231690
    Autors:  Geiser, David M; Al-Hatmi, Abdullah M S; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C; Bhattacharyya, Madan K; Blomquist, Cheryl L; Bowden, Robert L; Brankovics, Balazs; Brown, Daren W; Burgess, Lester W; Bushley, Kathryn; Busman, Mark; Cano-Lira, Jose F; Carrillo, Joseph D; Chang, Hao-Xun; Chen, Chi-Yu; Chen, Wanquan; Chilvers, Martin; Chulze, Sofia; Coleman, Jeffrey J; Cuomo, Christina A; de Beer, Z Wilhelm; de Hoog, G Sybren; Del Castillo-Munera, Johanna; Del Ponte, Emerson M; Dieguez-Uribeondo, Javier; Di Pietro, Antonio; Edel-Hermann, Veronique; Elmer, Wade H; Epstein, Lynn; Eskalen, Akif; Esposto, Maria Carmela; Everts, Kathryne L; Fernandez-Pavia, Sylvia P; da Silva, Gilvan Ferreira; Foroud, Nora A; Fourie, Gerda; Frandsen, Rasmus J N; Freeman, Stanley; Freitag, Michael; Frenkel, Omer; Fuller, Kevin K; Gagkaeva, Tatiana; Gardiner, Donald M; Glenn, Anthony E; Gold, Scott E; Gordon, Thomas R; Gregory, Nancy F; Gryzenhout, Marieka; Guarro, Josep; Gugino, Beth K; Gutierrez, Santiago; Hammond-Kosack, Kim E; Harris, Linda J; Homa, Monika; Hong, Cheng-Fang; Hornok, Laszlo; Huang, Jenn-Wen; Ilkit, Macit; Jacobs, Adriaana; Jacobs, Karin; Jiang, Cong; Jimenez-Gasco, Maria Del Mar; Kang, Seogchan; Kasson, Matthew T; Kazan, Kemal; Kennell, John C; Kim, Hye-Seon; Kistler, H Corby; Kuldau, Gretchen A; Kulik, Tomasz; Kurzai, Oliver; Laraba, Imane; Laurence, Matthew H; Lee, Theresa; Lee, Yin-Won; Lee, Yong-Hwan; Leslie, John F; Liew, Edward C Y; Lofton, Lily W; Logrieco, Antonio F; Lopez-Berges, Manuel S; Luque, Alicia G; Lysoe, Erik; Ma, Li-Jun; Marra, Robert E; Martin, Frank N; May, Sara R; McCormick, Susan P; McGee, Chyanna; Meis, Jacques F; Migheli, Quirico; Nor, N M I Mohamed; Monod, Michel; Moretti, Antonio; Mostert, Diane; Mule, Giusep
    Resum:
    Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

  • Altres:

    Enllaç font original: https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTO-08-20-0330-LE
    Referència de l'ítem segons les normes APA: Geiser, David M; Al-Hatmi, Abdullah M S; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C; Bhattacharyya, Madan K; Bl (2021). Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex. Phytopathology, 111(7), 1064-1079. DOI: 10.1094/phyto-08-20-0330-le
    Referència a l'article segons font original: Phytopathology. 111 (7): 1064-1079
    DOI de l'article: 10.1094/phyto-08-20-0330-le
    Any de publicació de la revista: 2021
    Entitat: Universitat Rovira i Virgili
    Versió de l'article dipositat: info:eu-repo/semantics/acceptedVersion
    Data d'alta del registre: 2025-02-18
    Autor/s de la URV: Cano Lira, José Francisco / Guarro Artigas, Josep
    Departament: Ciències Mèdiques Bàsiques
    URL Document de llicència: https://repositori.urv.cat/ca/proteccio-de-dades/
    Tipus de publicació: Journal Publications
    Autor segons l'article: Geiser, David M; Al-Hatmi, Abdullah M S; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C; Bhattacharyya, Madan K; Blomquist, Cheryl L; Bowden, Robert L; Brankovics, Balazs; Brown, Daren W; Burgess, Lester W; Bushley, Kathryn; Busman, Mark; Cano-Lira, Jose F; Carrillo, Joseph D; Chang, Hao-Xun; Chen, Chi-Yu; Chen, Wanquan; Chilvers, Martin; Chulze, Sofia; Coleman, Jeffrey J; Cuomo, Christina A; de Beer, Z Wilhelm; de Hoog, G Sybren; Del Castillo-Munera, Johanna; Del Ponte, Emerson M; Dieguez-Uribeondo, Javier; Di Pietro, Antonio; Edel-Hermann, Veronique; Elmer, Wade H; Epstein, Lynn; Eskalen, Akif; Esposto, Maria Carmela; Everts, Kathryne L; Fernandez-Pavia, Sylvia P; da Silva, Gilvan Ferreira; Foroud, Nora A; Fourie, Gerda; Frandsen, Rasmus J N; Freeman, Stanley; Freitag, Michael; Frenkel, Omer; Fuller, Kevin K; Gagkaeva, Tatiana; Gardiner, Donald M; Glenn, Anthony E; Gold, Scott E; Gordon, Thomas R; Gregory, Nancy F; Gryzenhout, Marieka; Guarro, Josep; Gugino, Beth K; Gutierrez, Santiago; Hammond-Kosack, Kim E; Harris, Linda J; Homa, Monika; Hong, Cheng-Fang; Hornok, Laszlo; Huang, Jenn-Wen; Ilkit, Macit; Jacobs, Adriaana; Jacobs, Karin; Jiang, Cong; Jimenez-Gasco, Maria Del Mar; Kang, Seogchan; Kasson, Matthew T; Kazan, Kemal; Kennell, John C; Kim, Hye-Seon; Kistler, H Corby; Kuldau, Gretchen A; Kulik, Tomasz; Kurzai, Oliver; Laraba, Imane; Laurence, Matthew H; Lee, Theresa; Lee, Yin-Won; Lee, Yong-Hwan; Leslie, John F; Liew, Edward C Y; Lofton, Lily W; Logrieco, Antonio F; Lopez-Berges, Manuel S; Luque, Alicia G; Lysoe, Erik; Ma, Li-Jun; Marra, Robert E; Martin, Frank N; May, Sara R; McCormick, Susan P; McGee, Chyanna; Meis, Jacques F; Migheli, Quirico; Nor, N M I Mohamed; Monod, Michel; Moretti, Antonio; Mostert, Diane; Mule, Giuseppina; Munkvold, Gary P; Nicholson, Paul; Nucci, Marcio; O'Donnell, Kerry; Pasquali, Matias; Pfenning, Ludwig H; Prigitano, Anna; Proctor, Robert H; Ranque, Stephane; Rehner, Stephen A; Rep, Martijn; Rodriguez-Alvarado, Gerardo; Rose, Lindy Joy; Roth, Mitchell G; Ruiz-Roldan, Carmen; Saleh, Amgad A; Salleh, Baharuddin; Sang, Hyunkyu; Scandiani, Maria Mercedes; Scauflaire, Jonathan; Schmale, David G, III; Short, Dylan P G; Sisic, Adnan; Smith, Jason A; Smyth, Christopher W; Son, Hokyoung; Spahr, Ellie; Stajich, Jason E; Steenkamp, Emma; Steinberg, Christian; Subramaniam, Rajagopal; Suga, Haruhisa; Summerell, Brett A; Susca, Antonella; Swett, Cassandra L; Toomajian, Christopher; Torres-Cruz, Terry J; Tortorano, Anna M; Urban, Martin; Vaillancourt, Lisa J; Vallad, Gary E; van der Lee, Theo A J; Vanderpool, Dan; van Diepeningen, Anne D; Vaughan, Martha M; Venter, Eduard; Vermeulen, Marcele; Verweij, Paul E; Viljoen, Altus; Waalwijk, Cees; Wallace, Emma C; Walther, Grit; Wang, Jie; Ward, Todd J; Wickes, Brian L; Wiederhold, Nathan P; Wingfield, Michael J; Wood, Ana K M; Xu, Jin-Rong; Yang, Xiao-Bing; Yli-Mattila, Tapani; Yun, Sung-Hwan; Zakaria, Latiffah; Zhang, Hao; Zhang, Ning; Zhang, Sean X; Zhang, Xue
    Accès a la llicència d'ús: https://creativecommons.org/licenses/by/3.0/es/
    Àrees temàtiques: Saúde coletiva, Química, Plant sciences, Plant science, Medicina ii, Medicina i, Materiais, General medicine, Farmacia, Ciências biológicas iii, Ciências biológicas ii, Ciências biológicas i, Ciências ambientais, Ciências agrárias i, Ciência da computação, Biotecnología, Biodiversidade, Agronomy and crop science
    Adreça de correu electrònic de l'autor: jose.cano@urv.cat

  • Paraules clau:

    Plants
    Plant diseases
    Phylogeny
    Fusarium
    Fungal pathogens
    Evolution
    Agronomy and Crop Science
    Plant Science
    Plant Sciences
    Saúde coletiva
    Química
    Medicina ii
    Medicina i
    Materiais
    General medicine
    Farmacia
    Ciências biológicas iii
    Ciências biológicas ii
    Ciências biológicas i
    Ciências ambientais
    Ciências agrárias i
    Ciência da computação
    Biotecnología
    Biodiversidade

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