Articles producció científicaQuímica Física i Inorgànica

GronOR: Massively parallel and GPU-accelerated non-orthogonal configuration interaction for large molecular systems

  • Identification data

    Identifier:  imarina:6112221
    Authors:  Straatsma, T P; Broer, R; Faraji, S; Havenith, R W A; Suarez, L E Aguilar; Kathir, R K; Wibowo, M; de Graaf, C
    Abstract:
    © 2020 U.S. Government. GronOR is a program package for non-orthogonal configuration interaction calculations for an electronic wave function built in terms of anti-symmetrized products of multi-configuration molecular fragment wave functions. The two-electron integrals that have to be processed may be expressed in terms of atomic orbitals or in terms of an orbital basis determined from the molecular orbitals of the fragments. The code has been specifically designed for execution on distributed memory massively parallel and Graphics Processing Unit (GPU)-accelerated computer architectures, using an MPI+OpenACC/OpenMP programming approach. The task-based execution model used in the implementation allows for linear scaling with the number of nodes on the largest pre-exascale architectures available, provides hardware fault resiliency, and enables effective execution on systems with distinct central processing unit-only and GPU-accelerated partitions. The code interfaces with existing multi-configuration electronic structure codes that provide optimized molecular fragment orbitals, configuration interaction coefficients, and the required integrals. Algorithm and implementation details, parallel and accelerated performance benchmarks, and an analysis of the sensitivity of the accuracy of results and computational performance to thresholds used in the calculations are presented.
  • Others:

    Link to the original source: https://aip.scitation.org/doi/10.1063/1.5141358
    APA: Straatsma, T P; Broer, R; Faraji, S; Havenith, R W A; Suarez, L E Aguilar; Kathir, R K; Wibowo, M; de Graaf, C (2020). GronOR: Massively parallel and GPU-accelerated non-orthogonal configuration interaction for large molecular systems. Journal Of Chemical Physics, 152(6), 064111-. DOI: 10.1063/1.5141358
    Paper original source: Journal Of Chemical Physics. 152 (6): 064111-
    Article's DOI: 10.1063/1.5141358
    Journal publication year: 2020
    Entity: Universitat Rovira i Virgili
    Paper version: info:eu-repo/semantics/acceptedVersion
    Record's date: 2025-02-18
    URV's Author/s: De Graaf, Cornelis
    Department: Química Física i Inorgànica
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Publication Type: Journal Publications
    ISSN: 00219606
    Author, as appears in the article.: Straatsma, T P; Broer, R; Faraji, S; Havenith, R W A; Suarez, L E Aguilar; Kathir, R K; Wibowo, M; de Graaf, C
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Thematic Areas: Química, Physics, atomic, molecular & chemical, Physics and astronomy (miscellaneous), Physics and astronomy (all), Physical and theoretical chemistry, Odontología, Medicine (miscellaneous), Medicina ii, Materiais, Matemática / probabilidade e estatística, Interdisciplinar, General physics and astronomy, Ensino, Engenharias iv, Engenharias iii, Engenharias ii, Ciências biológicas ii, Ciências ambientais, Ciência da computação, Chemistry, physical, Biotecnología, Biodiversidade, Astronomia / física
    Author's mail: coen.degraaf@urv.cat
  • Keywords:

    Hole states
    Electronic couplings
    Charge-transfer
    Broken orbital-symmetry
    Chemistry
    Physical
    Medicine (Miscellaneous)
    Physical and Theoretical Chemistry
    Physics and Astronomy (Miscellaneous)
    Physics
    Atomic
    Molecular & Chemical
    Química
    Physics and astronomy (all)
    Odontología
    Medicina ii
    Materiais
    Matemática / probabilidade e estatística
    Interdisciplinar
    General physics and astronomy
    Ensino
    Engenharias iv
    Engenharias iii
    Engenharias ii
    Ciências biológicas ii
    Ciências ambientais
    Ciência da computação
    Biotecnología
    Biodiversidade
    Astronomia / física
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