Articles producció científica> Enginyeria Química

ROS networks: designs, aging, Parkinson’s disease and precision therapies

  • Identification data

    Identifier: imarina:9138826
    Authors:
    Kolodkin, Alexey NSharma, Raju PrasadColangelo, Anna MariaIgnatenko, AndrewMartorana, FrancescaJennen, DanyelBried, Jacco JBrady, NathanBarberis, MatteoMondeel, Thierry D G APapa, MicheleKumar, VikasPeters, BernhardSkupin, AlexanderAlberghina, LiliaBalling, RudiWesterhoff, Hans, V
    Abstract:
    © 2020, The Author(s). How the network around ROS protects against oxidative stress and Parkinson’s disease (PD), and how processes at the minutes timescale cause disease and aging after decades, remains enigmatic. Challenging whether the ROS network is as complex as it seems, we built a fairly comprehensive version thereof which we disentangled into a hierarchy of only five simpler subnetworks each delivering one type of robustness. The comprehensive dynamic model described in vitro data sets from two independent laboratories. Notwithstanding its five-fold robustness, it exhibited a relatively sudden breakdown, after some 80 years of virtually steady performance: it predicted aging. PD-related conditions such as lack of DJ-1 protein or increased α-synuclein accelerated the collapse, while antioxidants or caffeine retarded it. Introducing a new concept (aging-time-control coefficient), we found that as many as 25 out of 57 molecular processes controlled aging. We identified new targets for “life-extending interventions”: mitochondrial synthesis, KEAP1 degradation, and p62 metabolism.
  • Others:

    Author, as appears in the article.: Kolodkin, Alexey N; Sharma, Raju Prasad; Colangelo, Anna Maria; Ignatenko, Andrew; Martorana, Francesca; Jennen, Danyel; Bried, Jacco J; Brady, Nathan; Barberis, Matteo; Mondeel, Thierry D G A; Papa, Michele; Kumar, Vikas; Peters, Bernhard; Skupin, Alexander; Alberghina, Lilia; Balling, Rudi; Westerhoff, Hans, V
    Department: Enginyeria Química
    URV's Author/s: Kumar, Vikas
    Keywords: Reactive oxygen species Precision medicine Parkinson disease Oxidative stress Molecular targeted therapy Models, biological Humans Computational biology Aging
    Abstract: © 2020, The Author(s). How the network around ROS protects against oxidative stress and Parkinson’s disease (PD), and how processes at the minutes timescale cause disease and aging after decades, remains enigmatic. Challenging whether the ROS network is as complex as it seems, we built a fairly comprehensive version thereof which we disentangled into a hierarchy of only five simpler subnetworks each delivering one type of robustness. The comprehensive dynamic model described in vitro data sets from two independent laboratories. Notwithstanding its five-fold robustness, it exhibited a relatively sudden breakdown, after some 80 years of virtually steady performance: it predicted aging. PD-related conditions such as lack of DJ-1 protein or increased α-synuclein accelerated the collapse, while antioxidants or caffeine retarded it. Introducing a new concept (aging-time-control coefficient), we found that as many as 25 out of 57 molecular processes controlled aging. We identified new targets for “life-extending interventions”: mitochondrial synthesis, KEAP1 degradation, and p62 metabolism.
    Thematic Areas: Modeling and simulation Mathematical & computational biology General biochemistry,genetics and molecular biology Drug discovery Computer science applications Biochemistry, genetics and molecular biology (miscellaneous) Biochemistry, genetics and molecular biology (all) Applied mathematics
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: vikas.kumar@urv.cat
    Author identifier: 0000-0002-9795-5967
    Record's date: 2025-03-03
    Journal volume: 6
    Paper version: info:eu-repo/semantics/publishedVersion
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Paper original source: Npj Syst Biol Appl. 6 (1): 34-
    APA: Kolodkin, Alexey N; Sharma, Raju Prasad; Colangelo, Anna Maria; Ignatenko, Andrew; Martorana, Francesca; Jennen, Danyel; Bried, Jacco J; Brady, Nathan (2020). ROS networks: designs, aging, Parkinson’s disease and precision therapies. Npj Syst Biol Appl, 6(1), 34-. DOI: 10.1038/s41540-020-00150-w
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2020
    Publication Type: Journal Publications
  • Keywords:

    Applied Mathematics,Biochemistry, Genetics and Molecular Biology (Miscellaneous),Computer Science Applications,Drug Discovery,Mathematical & Computational Biology,Modeling and Simulation
    Reactive oxygen species
    Precision medicine
    Parkinson disease
    Oxidative stress
    Molecular targeted therapy
    Models, biological
    Humans
    Computational biology
    Aging
    Modeling and simulation
    Mathematical & computational biology
    General biochemistry,genetics and molecular biology
    Drug discovery
    Computer science applications
    Biochemistry, genetics and molecular biology (miscellaneous)
    Biochemistry, genetics and molecular biology (all)
    Applied mathematics
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