Articles producció científica> Ciències Mèdiques Bàsiques

Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex

  • Identification data

    Identifier: imarina:9231690
    Authors:
    Geiser DMAl-Hatmi AMSAoki TArie TBalmas VBarnes IBergstrom GCBhattacharyya MKBlomquist CLBowden RLBrankovics BBrown DWBurgess LWBushley KBusman MCano-Lira JFCarrillo JDChang HXChen CYChen WChilvers MChulze SColeman JJCuomo CAWilhelm de Beer ZSybren de Hoog GCastillo-Munera JDDel Ponte EMDieguez-Uribeondo JPietro ADEdel-Hermann VElmer WHEpstein LEskalen AEsposto MCEverts KLFernandez-Pavıa SPda Silva GFForoud NAFourie GFrandsen RJNFreeman SFreitag MFrenkel OFuller KKGagkaeva TGardiner DMGlenn AEGold SEGordon TRGregory NFGryzenhout MGuarro JGugino BKGutierrez SHammond-Kosack KEHarris LJHoma MHong CFHornok LHuang JWIlkit MJacobs AJacobs KJiang Cdel Mar Jimenez-Gasco MKang SKasson MTKazan KKennell JCKim HSCorby Kistler HKuldau GAKulik TKurzai OLaraba ILaurence MHLee TLee YWLee YHLeslie JFLiew ECYLofton LWLogrieco AFLopez-Berges MSLuque AGLysøe EMa LJMarra REMartin FNMay SRMcCormick SPMcGee CMeis JFMigheli QMohamed Nor NMIMonod MMoretti AMostert DMule G
    Abstract:
    Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.
  • Others:

    Author, as appears in the article.: Geiser DM; Al-Hatmi AMS; Aoki T; Arie T; Balmas V; Barnes I; Bergstrom GC; Bhattacharyya MK; Blomquist CL; Bowden RL; Brankovics B; Brown DW; Burgess LW; Bushley K; Busman M; Cano-Lira JF; Carrillo JD; Chang HX; Chen CY; Chen W; Chilvers M; Chulze S; Coleman JJ; Cuomo CA; Wilhelm de Beer Z; Sybren de Hoog G; Castillo-Munera JD; Del Ponte EM; Dieguez-Uribeondo J; Pietro AD; Edel-Hermann V; Elmer WH; Epstein L; Eskalen A; Esposto MC; Everts KL; Fernandez-Pavıa SP; da Silva GF; Foroud NA; Fourie G; Frandsen RJN; Freeman S; Freitag M; Frenkel O; Fuller KK; Gagkaeva T; Gardiner DM; Glenn AE; Gold SE; Gordon TR; Gregory NF; Gryzenhout M; Guarro J; Gugino BK; Gutierrez S; Hammond-Kosack KE; Harris LJ; Homa M; Hong CF; Hornok L; Huang JW; Ilkit M; Jacobs A; Jacobs K; Jiang C; del Mar Jimenez-Gasco M; Kang S; Kasson MT; Kazan K; Kennell JC; Kim HS; Corby Kistler H; Kuldau GA; Kulik T; Kurzai O; Laraba I; Laurence MH; Lee T; Lee YW; Lee YH; Leslie JF; Liew ECY; Lofton LW; Logrieco AF; Lopez-Berges MS; Luque AG; Lysøe E; Ma LJ; Marra RE; Martin FN; May SR; McCormick SP; McGee C; Meis JF; Migheli Q; Mohamed Nor NMI; Monod M; Moretti A; Mostert D; Mule G
    Department: Ciències Mèdiques Bàsiques
    URV's Author/s: Cano Lira, José Francisco / Guarro Artigas, Josep
    Keywords: Fungal pathogens Evolution
    Abstract: Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.
    Thematic Areas: Saúde coletiva Química Plant sciences Plant science Medicina ii Medicina i Materiais General medicine Farmacia Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências ambientais Ciências agrárias i Ciência da computação Biotecnología Biodiversidade Agronomy and crop science
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: josep.guarro@urv.cat jose.cano@urv.cat
    Author identifier: 0000-0002-7839-7568 0000-0003-4495-4394
    Record's date: 2024-07-27
    Papper version: info:eu-repo/semantics/acceptedVersion
    Link to the original source: https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTO-08-20-0330-LE
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Papper original source: Phytopathology. 111 (7): 1064-1079
    APA: Geiser DM; Al-Hatmi AMS; Aoki T; Arie T; Balmas V; Barnes I; Bergstrom GC; Bhattacharyya MK; Blomquist CL; Bowden RL; Brankovics B; Brown DW; Burgess (2021). Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex. Phytopathology, 111(7), 1064-1079. DOI: 10.1094/phyto-08-20-0330-le
    Article's DOI: 10.1094/phyto-08-20-0330-le
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2021
    Publication Type: Journal Publications
  • Keywords:

    Agronomy and Crop Science,Plant Science,Plant Sciences
    Fungal pathogens
    Evolution
    Saúde coletiva
    Química
    Plant sciences
    Plant science
    Medicina ii
    Medicina i
    Materiais
    General medicine
    Farmacia
    Ciências biológicas iii
    Ciências biológicas ii
    Ciências biológicas i
    Ciências ambientais
    Ciências agrárias i
    Ciência da computação
    Biotecnología
    Biodiversidade
    Agronomy and crop science
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