Articles producció científicaCiències Mèdiques Bàsiques

Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex

  • Identification data

    Identifier:  imarina:9231690
    Handle: https://hdl.handle.net/20.500.11797/imarina9231690
    Authors:  Geiser, David M; Al-Hatmi, Abdullah M S; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C; Bhattacharyya, Madan K; Blomquist, Cheryl L; Bowden, Robert L; Brankovics, Balazs; Brown, Daren W; Burgess, Lester W; Bushley, Kathryn; Busman, Mark; Cano-Lira, Jose F; Carrillo, Joseph D; Chang, Hao-Xun; Chen, Chi-Yu; Chen, Wanquan; Chilvers, Martin; Chulze, Sofia; Coleman, Jeffrey J; Cuomo, Christina A; de Beer, Z Wilhelm; de Hoog, G Sybren; Del Castillo-Munera, Johanna; Del Ponte, Emerson M; Dieguez-Uribeondo, Javier; Di Pietro, Antonio; Edel-Hermann, Veronique; Elmer, Wade H; Epstein, Lynn; Eskalen, Akif; Esposto, Maria Carmela; Everts, Kathryne L; Fernandez-Pavia, Sylvia P; da Silva, Gilvan Ferreira; Foroud, Nora A; Fourie, Gerda; Frandsen, Rasmus J N; Freeman, Stanley; Freitag, Michael; Frenkel, Omer; Fuller, Kevin K; Gagkaeva, Tatiana; Gardiner, Donald M; Glenn, Anthony E; Gold, Scott E; Gordon, Thomas R; Gregory, Nancy F; Gryzenhout, Marieka; Guarro, Josep; Gugino, Beth K; Gutierrez, Santiago; Hammond-Kosack, Kim E; Harris, Linda J; Homa, Monika; Hong, Cheng-Fang; Hornok, Laszlo; Huang, Jenn-Wen; Ilkit, Macit; Jacobs, Adriaana; Jacobs, Karin; Jiang, Cong; Jimenez-Gasco, Maria Del Mar; Kang, Seogchan; Kasson, Matthew T; Kazan, Kemal; Kennell, John C; Kim, Hye-Seon; Kistler, H Corby; Kuldau, Gretchen A; Kulik, Tomasz; Kurzai, Oliver; Laraba, Imane; Laurence, Matthew H; Lee, Theresa; Lee, Yin-Won; Lee, Yong-Hwan; Leslie, John F; Liew, Edward C Y; Lofton, Lily W; Logrieco, Antonio F; Lopez-Berges, Manuel S; Luque, Alicia G; Lysoe, Erik; Ma, Li-Jun; Marra, Robert E; Martin, Frank N; May, Sara R; McCormick, Susan P; McGee, Chyanna; Meis, Jacques F; Migheli, Quirico; Nor, N M I Mohamed; Monod, Michel; Moretti, Antonio; Mostert, Diane; Mule, Giusep
    Abstract:
    Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

  • Others:

    Link to the original source: https://apsjournals.apsnet.org/doi/pdf/10.1094/PHYTO-08-20-0330-LE
    APA: Geiser, David M; Al-Hatmi, Abdullah M S; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C; Bhattacharyya, Madan K; Bl (2021). Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex. Phytopathology, 111(7), 1064-1079. DOI: 10.1094/phyto-08-20-0330-le
    Paper original source: Phytopathology. 111 (7): 1064-1079
    Article's DOI: 10.1094/phyto-08-20-0330-le
    Journal publication year: 2021
    Entity: Universitat Rovira i Virgili
    Paper version: info:eu-repo/semantics/acceptedVersion
    Record's date: 2025-02-18
    URV's Author/s: Cano Lira, José Francisco / Guarro Artigas, Josep
    Department: Ciències Mèdiques Bàsiques
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Publication Type: Journal Publications
    Author, as appears in the article.: Geiser, David M; Al-Hatmi, Abdullah M S; Aoki, Takayuki; Arie, Tsutomu; Balmas, Virgilio; Barnes, Irene; Bergstrom, Gary C; Bhattacharyya, Madan K; Blomquist, Cheryl L; Bowden, Robert L; Brankovics, Balazs; Brown, Daren W; Burgess, Lester W; Bushley, Kathryn; Busman, Mark; Cano-Lira, Jose F; Carrillo, Joseph D; Chang, Hao-Xun; Chen, Chi-Yu; Chen, Wanquan; Chilvers, Martin; Chulze, Sofia; Coleman, Jeffrey J; Cuomo, Christina A; de Beer, Z Wilhelm; de Hoog, G Sybren; Del Castillo-Munera, Johanna; Del Ponte, Emerson M; Dieguez-Uribeondo, Javier; Di Pietro, Antonio; Edel-Hermann, Veronique; Elmer, Wade H; Epstein, Lynn; Eskalen, Akif; Esposto, Maria Carmela; Everts, Kathryne L; Fernandez-Pavia, Sylvia P; da Silva, Gilvan Ferreira; Foroud, Nora A; Fourie, Gerda; Frandsen, Rasmus J N; Freeman, Stanley; Freitag, Michael; Frenkel, Omer; Fuller, Kevin K; Gagkaeva, Tatiana; Gardiner, Donald M; Glenn, Anthony E; Gold, Scott E; Gordon, Thomas R; Gregory, Nancy F; Gryzenhout, Marieka; Guarro, Josep; Gugino, Beth K; Gutierrez, Santiago; Hammond-Kosack, Kim E; Harris, Linda J; Homa, Monika; Hong, Cheng-Fang; Hornok, Laszlo; Huang, Jenn-Wen; Ilkit, Macit; Jacobs, Adriaana; Jacobs, Karin; Jiang, Cong; Jimenez-Gasco, Maria Del Mar; Kang, Seogchan; Kasson, Matthew T; Kazan, Kemal; Kennell, John C; Kim, Hye-Seon; Kistler, H Corby; Kuldau, Gretchen A; Kulik, Tomasz; Kurzai, Oliver; Laraba, Imane; Laurence, Matthew H; Lee, Theresa; Lee, Yin-Won; Lee, Yong-Hwan; Leslie, John F; Liew, Edward C Y; Lofton, Lily W; Logrieco, Antonio F; Lopez-Berges, Manuel S; Luque, Alicia G; Lysoe, Erik; Ma, Li-Jun; Marra, Robert E; Martin, Frank N; May, Sara R; McCormick, Susan P; McGee, Chyanna; Meis, Jacques F; Migheli, Quirico; Nor, N M I Mohamed; Monod, Michel; Moretti, Antonio; Mostert, Diane; Mule, Giuseppina; Munkvold, Gary P; Nicholson, Paul; Nucci, Marcio; O'Donnell, Kerry; Pasquali, Matias; Pfenning, Ludwig H; Prigitano, Anna; Proctor, Robert H; Ranque, Stephane; Rehner, Stephen A; Rep, Martijn; Rodriguez-Alvarado, Gerardo; Rose, Lindy Joy; Roth, Mitchell G; Ruiz-Roldan, Carmen; Saleh, Amgad A; Salleh, Baharuddin; Sang, Hyunkyu; Scandiani, Maria Mercedes; Scauflaire, Jonathan; Schmale, David G, III; Short, Dylan P G; Sisic, Adnan; Smith, Jason A; Smyth, Christopher W; Son, Hokyoung; Spahr, Ellie; Stajich, Jason E; Steenkamp, Emma; Steinberg, Christian; Subramaniam, Rajagopal; Suga, Haruhisa; Summerell, Brett A; Susca, Antonella; Swett, Cassandra L; Toomajian, Christopher; Torres-Cruz, Terry J; Tortorano, Anna M; Urban, Martin; Vaillancourt, Lisa J; Vallad, Gary E; van der Lee, Theo A J; Vanderpool, Dan; van Diepeningen, Anne D; Vaughan, Martha M; Venter, Eduard; Vermeulen, Marcele; Verweij, Paul E; Viljoen, Altus; Waalwijk, Cees; Wallace, Emma C; Walther, Grit; Wang, Jie; Ward, Todd J; Wickes, Brian L; Wiederhold, Nathan P; Wingfield, Michael J; Wood, Ana K M; Xu, Jin-Rong; Yang, Xiao-Bing; Yli-Mattila, Tapani; Yun, Sung-Hwan; Zakaria, Latiffah; Zhang, Hao; Zhang, Ning; Zhang, Sean X; Zhang, Xue
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Thematic Areas: Saúde coletiva, Química, Plant sciences, Plant science, Medicina ii, Medicina i, Materiais, General medicine, Farmacia, Ciências biológicas iii, Ciências biológicas ii, Ciências biológicas i, Ciências ambientais, Ciências agrárias i, Ciência da computação, Biotecnología, Biodiversidade, Agronomy and crop science
    Author's mail: jose.cano@urv.cat

  • Keywords:

    Plants
    Plant diseases
    Phylogeny
    Fusarium
    Fungal pathogens
    Evolution
    Agronomy and Crop Science
    Plant Science
    Plant Sciences
    Saúde coletiva
    Química
    Medicina ii
    Medicina i
    Materiais
    General medicine
    Farmacia
    Ciências biológicas iii
    Ciências biológicas ii
    Ciências biológicas i
    Ciências ambientais
    Ciências agrárias i
    Ciência da computação
    Biotecnología
    Biodiversidade

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