Articles producció científica> Ciències Mèdiques Bàsiques

Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species

  • Identification data

    Identifier: imarina:9242216
    Authors:
    Sklená? FJurjevi? ŽHoubraken JKola?ík MArendrup MCJørgensen KMSiqueira JPZGené JYaguchi TEzekiel CNSilva Pereira CHubka V
    Abstract:
    Since the last revision in 2015, the taxonomy of section Flavipedes evolved rapidly along with the availability of new species delimitation techniques. This study aims to re-evaluate the species boundaries of section Flavipedes members using modern delimitation methods applied to an extended set of strains (n = 90) collected from various environments. The analysis used DNA sequences of three house-keeping genes (benA, CaM, RPB2) and consisted of two steps: application of several single-locus (GMYC, bGMYC, PTP, bPTP) and multi-locus (STACEY) species delimitation methods to sort the isolates into putative species, which were subsequently validated using DELINEATE software that was applied for the first time in fungal taxonomy. As a result, four new species are introduced, i.e. A. alboluteus, A. alboviridis, A. inusitatus and A. lanuginosus, and A. capensis is synonymized with A. iizukae. Phenotypic analyses were performed for the new species and their relatives, and the results showed that the growth parameters at different temperatures and colonies characteristics were useful for differentiation of these taxa. The revised section harbors 18 species, most of them are known from soil. However, the most common species from the section are ecologically diverse, occurring in the indoor environment (six species), clinical samples (five species), food and feed (four species), droppings (four species) and other less common substrates/environments. Due to the occurrence of section Flavipedes species in the clinical material/hospital environment, we also evaluated the susceptibility of 67 strains to six antifungals (amphotericin B, itraconazole, posaconazole, voriconazole, isavuconazole, terbinafine) using the reference EUCAST method. These results showed some potentially clinical
  • Others:

    Author, as appears in the article.: Sklená? F; Jurjevi? Ž; Houbraken J; Kola?ík M; Arendrup MC; Jørgensen KM; Siqueira JPZ; Gené J; Yaguchi T; Ezekiel CN; Silva Pereira C; Hubka V
    Department: Ciències Mèdiques Bàsiques
    URV's Author/s: Gené Díaz, Josepa / ZEN SIQUEIRA, JOAO PAULO
    Keywords: Species delimitation Soil-borne fungi Multigene phylogeny Indoor fungi Clinical fungi Aspergillus flavipes Antifungal susceptibility testing Amphotericin-b tree talaromyces susceptibility species delimitation soil-borne fungi soil recognition penicillium multigene phylogeny itraconazole indoor fungi identification fungi clinical fungi antifungal susceptibility testing
    Abstract: Since the last revision in 2015, the taxonomy of section Flavipedes evolved rapidly along with the availability of new species delimitation techniques. This study aims to re-evaluate the species boundaries of section Flavipedes members using modern delimitation methods applied to an extended set of strains (n = 90) collected from various environments. The analysis used DNA sequences of three house-keeping genes (benA, CaM, RPB2) and consisted of two steps: application of several single-locus (GMYC, bGMYC, PTP, bPTP) and multi-locus (STACEY) species delimitation methods to sort the isolates into putative species, which were subsequently validated using DELINEATE software that was applied for the first time in fungal taxonomy. As a result, four new species are introduced, i.e. A. alboluteus, A. alboviridis, A. inusitatus and A. lanuginosus, and A. capensis is synonymized with A. iizukae. Phenotypic analyses were performed for the new species and their relatives, and the results showed that the growth parameters at different temperatures and colonies characteristics were useful for differentiation of these taxa. The revised section harbors 18 species, most of them are known from soil. However, the most common species from the section are ecologically diverse, occurring in the indoor environment (six species), clinical samples (five species), food and feed (four species), droppings (four species) and other less common substrates/environments. Due to the occurrence of section Flavipedes species in the clinical material/hospital environment, we also evaluated the susceptibility of 67 strains to six antifungals (amphotericin B, itraconazole, posaconazole, voriconazole, isavuconazole, terbinafine) using the reference EUCAST method. These results showed some potentially clinically relevant differences in susceptibility between species. For example, MICs higher than those observed for A. fumigatus wild-type were found for both triazoles and amphotericin B for A. ardalensis, A. iizukae, and A. spelaeus whereas A. lanuginosus, A. luppiae, A. movilensis, A. neoflavipes, A. olivimuriae and A. suttoniae were comparable to or more susceptible as A. fumigatus. Finally, terbinafine was in vitro active against all species except A. alboviridis. © 2021 THE AUTHORS
    Thematic Areas: Plant science Mycology Interdisciplinar Ciências biológicas iii Ciências agrárias i Biotecnología Agricultural and biological sciences (miscellaneous)
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: josepa.gene@urv.cat
    Author identifier: 0000-0001-6195-9299
    Record's date: 2024-07-27
    Papper version: info:eu-repo/semantics/publishedVersion
    Link to the original source: https://www.sciencedirect.com/science/article/abs/pii/S0013935121009130?via%3Dihub
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Papper original source: Studies In Mycology. 99 (99):
    APA: Sklená? F; Jurjevi? Ž; Houbraken J; Kola?ík M; Arendrup MC; Jørgensen KM; Siqueira JPZ; Gené J; Yaguchi T; Ezekiel CN; Silva Pereira C; Hubka V (2021). Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species. Studies In Mycology, 99(99), -. DOI: 10.1016/j.simyco.2021.100120
    Article's DOI: 10.1016/j.simyco.2021.100120
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2021
    Publication Type: Journal Publications
  • Keywords:

    Agricultural and Biological Sciences (Miscellaneous),Mycology,Plant Science
    Species delimitation
    Soil-borne fungi
    Multigene phylogeny
    Indoor fungi
    Clinical fungi
    Aspergillus flavipes
    Antifungal susceptibility testing
    Amphotericin-b
    tree
    talaromyces
    susceptibility
    species delimitation
    soil-borne fungi
    soil
    recognition
    penicillium
    multigene phylogeny
    itraconazole
    indoor fungi
    identification
    fungi
    clinical fungi
    antifungal susceptibility testing
    Plant science
    Mycology
    Interdisciplinar
    Ciências biológicas iii
    Ciências agrárias i
    Biotecnología
    Agricultural and biological sciences (miscellaneous)
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