Articles producció científica> Enginyeria Electrònica, Elèctrica i Automàtica

Avoiding hard chromatographic segmentation: A moving window approach for the automated resolution of gas chromatography–mass spectrometry-based metabolomics signals by multivariate methods

  • Identification data

    Identifier: imarina:9285513
    Authors:
    Domingo-Almenara XPerera ABrezmes J
    Abstract:
    Gas chromatography–mass spectrometry (GC–MS) produces large and complex datasets characterized by co-eluted compounds and at trace levels, and with a distinct compound ion-redundancy as a result of the high fragmentation by the electron impact ionization. Compounds in GC–MS can be resolved by taking advantage of the multivariate nature of GC–MS data by applying multivariate resolution methods. However, multivariate methods have to be applied in small regions of the chromatogram, and therefore chromatograms are segmented prior to the application of the algorithms. The automation of this segmentation process is a challenging task as it implies separating between informative data and noise from the chromatogram. This study demonstrates the capabilities of independent component analysis–orthogonal signal deconvolution (ICA–OSD) and multivariate curve resolution–alternating least squares (MCR–ALS) with an overlapping moving window implementation to avoid the typical hard chromatographic segmentation. Also, after being resolved, compounds are aligned across samples by an automated alignment algorithm. We evaluated the proposed methods through a quantitative analysis of GC–qTOF MS data from 25 serum samples. The quantitative performance of both moving window ICA–OSD and MCR–ALS-based implementations was compared with the quantification of 33 compounds by the XCMS package. Results shown that most of the R2 coefficients of determination exhibited a high correlation (R2 > 0.90) in both ICA–OSD and MCR–ALS moving window-based approaches. © 2016 Elsevier B.V.
  • Others:

    Author, as appears in the article.: Domingo-Almenara X; Perera A; Brezmes J
    Department: Enginyeria Electrònica, Elèctrica i Automàtica
    URV's Author/s: Brezmes Llecha, Jesús Jorge / Domingo Almenara, Xavier
    Keywords: Spectrometry Reproducibility Quantitative analysis Procedures Priority journal Orthogonal signals Orthogonal signal deconvolution Multivariate methods Multivariate curve resolution Multivariate analysis Moving window Metabolomics Mass spectrometry Mass fragmentography Least-squares analysis Least square analysis Ionization of gases Ionization Independent component analysis Impact ionization Gas chromatography-mass spectrometry Gas chromatography Electron impact-ionization Chromatography Chromatographic analysis Blood analysis Automation Automated resolution Article Alternating least squares Algorithms Algorithm multivariate curve resolution moving window metabolomics independent component analysis gas chromatography
    Abstract: Gas chromatography–mass spectrometry (GC–MS) produces large and complex datasets characterized by co-eluted compounds and at trace levels, and with a distinct compound ion-redundancy as a result of the high fragmentation by the electron impact ionization. Compounds in GC–MS can be resolved by taking advantage of the multivariate nature of GC–MS data by applying multivariate resolution methods. However, multivariate methods have to be applied in small regions of the chromatogram, and therefore chromatograms are segmented prior to the application of the algorithms. The automation of this segmentation process is a challenging task as it implies separating between informative data and noise from the chromatogram. This study demonstrates the capabilities of independent component analysis–orthogonal signal deconvolution (ICA–OSD) and multivariate curve resolution–alternating least squares (MCR–ALS) with an overlapping moving window implementation to avoid the typical hard chromatographic segmentation. Also, after being resolved, compounds are aligned across samples by an automated alignment algorithm. We evaluated the proposed methods through a quantitative analysis of GC–qTOF MS data from 25 serum samples. The quantitative performance of both moving window ICA–OSD and MCR–ALS-based implementations was compared with the quantification of 33 compounds by the XCMS package. Results shown that most of the R2 coefficients of determination exhibited a high correlation (R2 > 0.90) in both ICA–OSD and MCR–ALS moving window-based approaches. © 2016 Elsevier B.V.
    Thematic Areas: Zootecnia / recursos pesqueiros Química Organic chemistry Nutrição Medicine (miscellaneous) Medicina veterinaria Medicina ii Medicina i Materiais Interdisciplinar Geociências General medicine Farmacia Engenharias ii Engenharias i Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências agrárias i Ciência de alimentos Chemistry, analytical Biotecnología Biodiversidade Biochemistry Biochemical research methods Analytical chemistry
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: xavier.domingo@urv.cat jesus.brezmes@urv.cat
    Author identifier: 0000-0002-7704-8550
    Record's date: 2024-10-26
    Papper version: info:eu-repo/semantics/acceptedVersion
    Link to the original source: https://www.sciencedirect.com/science/article/abs/pii/S0021967316314315
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Papper original source: Journal Of Chromatography a. 1474 145-151
    APA: Domingo-Almenara X; Perera A; Brezmes J (2016). Avoiding hard chromatographic segmentation: A moving window approach for the automated resolution of gas chromatography–mass spectrometry-based metabolomics signals by multivariate methods. Journal Of Chromatography a, 1474(), 145-151. DOI: 10.1016/j.chroma.2016.10.066
    Article's DOI: 10.1016/j.chroma.2016.10.066
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2016
    Publication Type: Journal Publications
  • Keywords:

    Analytical Chemistry,Biochemical Research Methods,Biochemistry,Chemistry, Analytical,Medicine (Miscellaneous),Organic Chemistry
    Spectrometry
    Reproducibility
    Quantitative analysis
    Procedures
    Priority journal
    Orthogonal signals
    Orthogonal signal deconvolution
    Multivariate methods
    Multivariate curve resolution
    Multivariate analysis
    Moving window
    Metabolomics
    Mass spectrometry
    Mass fragmentography
    Least-squares analysis
    Least square analysis
    Ionization of gases
    Ionization
    Independent component analysis
    Impact ionization
    Gas chromatography-mass spectrometry
    Gas chromatography
    Electron impact-ionization
    Chromatography
    Chromatographic analysis
    Blood analysis
    Automation
    Automated resolution
    Article
    Alternating least squares
    Algorithms
    Algorithm
    multivariate curve resolution
    moving window
    metabolomics
    independent component analysis
    gas chromatography
    Zootecnia / recursos pesqueiros
    Química
    Organic chemistry
    Nutrição
    Medicine (miscellaneous)
    Medicina veterinaria
    Medicina ii
    Medicina i
    Materiais
    Interdisciplinar
    Geociências
    General medicine
    Farmacia
    Engenharias ii
    Engenharias i
    Ciências biológicas iii
    Ciências biológicas ii
    Ciências biológicas i
    Ciências agrárias i
    Ciência de alimentos
    Chemistry, analytical
    Biotecnología
    Biodiversidade
    Biochemistry
    Biochemical research methods
    Analytical chemistry
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