Articles producció científica> Enginyeria Química

Generic Platform for the Multiplexed Targeted Electrochemical Detection of Osteoporosis-Associated Single Nucleotide Polymorphisms Using Recombinase Polymerase Solid-Phase Primer Elongation and Ferrocene-Modified Nucleoside Triphosphates

  • Identification data

    Identifier: imarina:9326298
    Authors:
    Ortiz, MayreliJauset-Rubio, MiriamTrummer, OliviaFoessl, InesKodr, DavidAcero, Josep LluisBotero, Mary LuzBiggs, PhilLenartowicz, DanielTrajanoska, KaterinaRivadeneira, FernandoHocek, MichalObermayer-Pietsch, BarbaraO'Sullivan, Ciara K
    Abstract:
    Generic platformusing isothermal solid-phase primer elongationfor cost-effective, rapid electrochemical SNP genotyping from a fingerprickblood sample.Osteoporosis is amultifactorial disease influenced by geneticand environmental factors, which contributes to an increased riskof bone fracture, but early diagnosis of this disease cannot be achievedusing current techniques. We describe a generic platform for the targetedelectrochemical genotyping of SNPs identified by genome-wide associationstudies to be associated with a genetic predisposition to osteoporosis.The platform exploits isothermal solid-phase primer elongation withferrocene-labeled nucleoside triphosphates. Thiolated reverse primersdesigned for each SNP were immobilized on individual gold electrodesof an array. These primers are designed to hybridize to the SNP siteat their 3 & PRIME;OH terminal, and primer elongation occurs only wherethere is 100% complementarity, facilitating the identification andheterozygosity of each SNP under interrogation. The platform was appliedto real blood samples, which were thermally lysed and directly usedwithout the need for DNA extraction or purification. The results werevalidated using Taqman SNP genotyping assays and Sanger sequencing.The assay is complete in just 15 min with a total cost of 0.3europer electrode. The platform is completely generic and has immensepotential for deployment at the point of need in an automated devicefor targeted SNP genotyping with the only required end-user interventionbeing sample addition.
  • Others:

    Author, as appears in the article.: Ortiz, Mayreli; Jauset-Rubio, Miriam; Trummer, Olivia; Foessl, Ines; Kodr, David; Acero, Josep Lluis; Botero, Mary Luz; Biggs, Phil; Lenartowicz, Daniel; Trajanoska, Katerina; Rivadeneira, Fernando; Hocek, Michal; Obermayer-Pietsch, Barbara; O'Sullivan, Ciara K
    Department: Enginyeria Química
    URV's Author/s: ACERO SÁNCHEZ, JOSEP LLUÍS / BOTERO GALLEGO, MARY LUZ / Jauset Rubio, Miriam / O'SULLIVAN, CIARA KATHLEEN / Ortíz Rodríguez, Mayreli
    Keywords: Risk Markers Identification Fracture Extension Epidemiology Dna Chain-reaction Bone-mineral density Amplification
    Abstract: Generic platformusing isothermal solid-phase primer elongationfor cost-effective, rapid electrochemical SNP genotyping from a fingerprickblood sample.Osteoporosis is amultifactorial disease influenced by geneticand environmental factors, which contributes to an increased riskof bone fracture, but early diagnosis of this disease cannot be achievedusing current techniques. We describe a generic platform for the targetedelectrochemical genotyping of SNPs identified by genome-wide associationstudies to be associated with a genetic predisposition to osteoporosis.The platform exploits isothermal solid-phase primer elongation withferrocene-labeled nucleoside triphosphates. Thiolated reverse primersdesigned for each SNP were immobilized on individual gold electrodesof an array. These primers are designed to hybridize to the SNP siteat their 3 & PRIME;OH terminal, and primer elongation occurs only wherethere is 100% complementarity, facilitating the identification andheterozygosity of each SNP under interrogation. The platform was appliedto real blood samples, which were thermally lysed and directly usedwithout the need for DNA extraction or purification. The results werevalidated using Taqman SNP genotyping assays and Sanger sequencing.The assay is complete in just 15 min with a total cost of 0.3europer electrode. The platform is completely generic and has immensepotential for deployment at the point of need in an automated devicefor targeted SNP genotyping with the only required end-user interventionbeing sample addition.
    Thematic Areas: General chemistry General chemical engineering Chemistry, multidisciplinary Chemistry (miscellaneous) Chemistry (all) Chemical engineering (miscellaneous) Chemical engineering (all)
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: mayreli.ortiz@urv.cat miriam.jauset@urv.cat mayreli.ortiz@urv.cat
    Author identifier: 0000-0002-9423-0055 0000-0002-9943-6132 0000-0002-9423-0055
    Record's date: 2024-10-26
    Papper version: info:eu-repo/semantics/publishedVersion
    Link to the original source: https://pubs.acs.org/doi/10.1021/acscentsci.3c00243
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Papper original source: Acs Central Science. 9 (8): 1591-1602
    APA: Ortiz, Mayreli; Jauset-Rubio, Miriam; Trummer, Olivia; Foessl, Ines; Kodr, David; Acero, Josep Lluis; Botero, Mary Luz; Biggs, Phil; Lenartowicz, Dani (2023). Generic Platform for the Multiplexed Targeted Electrochemical Detection of Osteoporosis-Associated Single Nucleotide Polymorphisms Using Recombinase Polymerase Solid-Phase Primer Elongation and Ferrocene-Modified Nucleoside Triphosphates. Acs Central Science, 9(8), 1591-1602. DOI: 10.1021/acscentsci.3c00243
    Article's DOI: 10.1021/acscentsci.3c00243
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2023
    Publication Type: Journal Publications
  • Keywords:

    Chemical Engineering (Miscellaneous),Chemistry (Miscellaneous),Chemistry, Multidisciplinary
    Risk
    Markers
    Identification
    Fracture
    Extension
    Epidemiology
    Dna
    Chain-reaction
    Bone-mineral density
    Amplification
    General chemistry
    General chemical engineering
    Chemistry, multidisciplinary
    Chemistry (miscellaneous)
    Chemistry (all)
    Chemical engineering (miscellaneous)
    Chemical engineering (all)
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