Articles producció científica> Química Física i Inorgànica

De novo design of proteins housing excitonically coupled chlorophyll special pairs

  • Identification data

    Identifier: imarina:9369652
    Authors:
    Ennist, Nathan MWang, ShunzhiKennedy, Madison ACurti, MarianoSutherland, George AVasilev, CvetelinRedler, Rachel LMaffeis, ValentinShareef, SaeedSica, Anthony VHua, Ash SuehDeshmukh, Arundhati PMoyer, Adam PHicks, Derrick RSwartz, Avi ZCacho, Ralph ANovy, NathanBera, Asim KKang, AlexSankaran, BanumathiJohnson, Matthew PPhadkule, AmalaReppert, MikeEkiert, DamianBhabha, GiraStewart, LanceCaram, Justin RStoddard, Barry LRomero, ElisabetHunter, C NeilBaker, David
    Abstract:
    Natural photosystems couple light harvesting to charge separation using a 'special pair' of chlorophyll molecules that accepts excitation energy from the antenna and initiates an electron-transfer cascade. To investigate the photophysics of special pairs independently of the complexities of native photosynthetic proteins, and as a first step toward creating synthetic photosystems for new energy conversion technologies, we designed C 2-symmetric proteins that hold two chlorophyll molecules in closely juxtaposed arrangements. X-ray crystallography confirmed that one designed protein binds two chlorophylls in the same orientation as native special pairs, whereas a second designed protein positions them in a previously unseen geometry. Spectroscopy revealed that the chlorophylls are excitonically coupled, and fluorescence lifetime imaging demonstrated energy transfer. The cryo-electron microscopy structure of a designed 24-chlorophyll octahedral nanocage with a special pair on each edge closely matched the design model. The results suggest that the de novo design of artificial photosynthetic systems is within reach of current computational methods. A de novo-designed protein that precisely assembles a chlorophyll dimer has been developed. The design matches the conformation of the native 'special pair' of chlorophylls that functions as the primary electron donor in natural photosynthetic reaction centers. In the designed protein, excitonically coupled chlorophylls participate in energy transfer. The proteins were also redesigned to assemble into 24-chlorophyll nanocages.
  • Others:

    Author, as appears in the article.: Ennist, Nathan M; Wang, Shunzhi; Kennedy, Madison A; Curti, Mariano; Sutherland, George A; Vasilev, Cvetelin; Redler, Rachel L; Maffeis, Valentin; Shareef, Saeed; Sica, Anthony V; Hua, Ash Sueh; Deshmukh, Arundhati P; Moyer, Adam P; Hicks, Derrick R; Swartz, Avi Z; Cacho, Ralph A; Novy, Nathan; Bera, Asim K; Kang, Alex; Sankaran, Banumathi; Johnson, Matthew P; Phadkule, Amala; Reppert, Mike; Ekiert, Damian; Bhabha, Gira; Stewart, Lance; Caram, Justin R; Stoddard, Barry L; Romero, Elisabet; Hunter, C Neil; Baker, David
    Department: Química Física i Inorgànica
    URV's Author/s: Shareef, Saeed
    Keywords: Chlorophyll Computational design Cp29 antenna complex Cryo-em structure Cryoelectron microscopy Crystallography, x-ray Energy transfer Excitation-energy transfer Light-harvesting protein complexes Microscopy Model Models, molecular Photosynthesis Porphyri Protein conformation Reaction centers Saxs X-ray
    Abstract: Natural photosystems couple light harvesting to charge separation using a 'special pair' of chlorophyll molecules that accepts excitation energy from the antenna and initiates an electron-transfer cascade. To investigate the photophysics of special pairs independently of the complexities of native photosynthetic proteins, and as a first step toward creating synthetic photosystems for new energy conversion technologies, we designed C 2-symmetric proteins that hold two chlorophyll molecules in closely juxtaposed arrangements. X-ray crystallography confirmed that one designed protein binds two chlorophylls in the same orientation as native special pairs, whereas a second designed protein positions them in a previously unseen geometry. Spectroscopy revealed that the chlorophylls are excitonically coupled, and fluorescence lifetime imaging demonstrated energy transfer. The cryo-electron microscopy structure of a designed 24-chlorophyll octahedral nanocage with a special pair on each edge closely matched the design model. The results suggest that the de novo design of artificial photosynthetic systems is within reach of current computational methods. A de novo-designed protein that precisely assembles a chlorophyll dimer has been developed. The design matches the conformation of the native 'special pair' of chlorophylls that functions as the primary electron donor in natural photosynthetic reaction centers. In the designed protein, excitonically coupled chlorophylls participate in energy transfer. The proteins were also redesigned to assemble into 24-chlorophyll nanocages.
    Thematic Areas: Astronomia / física Biochemistry & molecular biology Biodiversidade Cell biology Ciência da computação Ciências biológicas i Ciências biológicas ii Farmacia General medicine Medicina i Molecular biology Química
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: saeed.shareef@estudiants.urv.cat
    Author identifier: 0000-0002-8412-1939
    Record's date: 2025-02-18
    Paper version: info:eu-repo/semantics/publishedVersion
    Paper original source: Nature Chemical Biology. 20 (7): 906-
    APA: Ennist, Nathan M; Wang, Shunzhi; Kennedy, Madison A; Curti, Mariano; Sutherland, George A; Vasilev, Cvetelin; Redler, Rachel L; Maffeis, Valentin; Sha (2024). De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nature Chemical Biology, 20(7), 906-. DOI: 10.1038/s41589-024-01626-0
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2024
    Publication Type: Journal Publications
  • Keywords:

    Biochemistry & Molecular Biology,Cell Biology,Molecular Biology
    Chlorophyll
    Computational design
    Cp29 antenna complex
    Cryo-em structure
    Cryoelectron microscopy
    Crystallography, x-ray
    Energy transfer
    Excitation-energy transfer
    Light-harvesting protein complexes
    Microscopy
    Model
    Models, molecular
    Photosynthesis
    Porphyri
    Protein conformation
    Reaction centers
    Saxs
    X-ray
    Astronomia / física
    Biochemistry & molecular biology
    Biodiversidade
    Cell biology
    Ciência da computação
    Ciências biológicas i
    Ciências biológicas ii
    Farmacia
    General medicine
    Medicina i
    Molecular biology
    Química
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