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Seeking the Optimal Descriptor for SN2 Reactions through Statistical Analysis of Density Functional Theory Results

  • Identification data

    Identifier: imarina:9432259
    Authors:
    Moran-Gonzalez, LuciaBesora, MariaMaseras, Feliu
    Abstract:
    Bimolecular nucleophilic substitution is one of the fundamental reactions in organic chemistry, yet there is still knowledge to be gained on the role of the nucleophile and the substrate. A statistical treatment of over 600 density functional theory (DFT)-computed barriers for bimolecular nucleophilic substitution at methyl derivatives (S(N)2@C) leads to the identification of numerical descriptors that best represent the entering and leaving ability of 26 different nucleophiles. The treatment is based on singular value decomposition (SVD) of a matrix of computed energy barriers. The current work represents the extension to a problem of reactivity of the hidden descriptor methodology that we had previously developed for the thermodynamic problem of bond dissociation energies in transition-metal complexes. The analysis of the results shows that a single descriptor is sufficient. This hidden descriptor has different values for nucleophilic and leaving abilities and, contrary to expectation, does not correlate especially well with either frontier molecular orbital descriptors or solvation descriptors. In contrast, it correlates with other thermodynamic and geometric parameters. This statistical procedure can be in principle extended to additional chemical fragments and other reactions.
  • Others:

    Author, as appears in the article.: Moran-Gonzalez, Lucia; Besora, Maria; Maseras, Feliu
    Department: Química Física i Inorgànica
    URV's Author/s: Besora Bonet, Maria
    Keywords: activation basis-set cl computational chemistry kinetics molecular calculations potentials sn2 reactions thermochemistry Activation Basis-set Cl Computational chemistry Kinetic Kinetics Molecular calculations Potentials Sn2 reactions Thermochemistry Williamson ether synthesis
    Abstract: Bimolecular nucleophilic substitution is one of the fundamental reactions in organic chemistry, yet there is still knowledge to be gained on the role of the nucleophile and the substrate. A statistical treatment of over 600 density functional theory (DFT)-computed barriers for bimolecular nucleophilic substitution at methyl derivatives (S(N)2@C) leads to the identification of numerical descriptors that best represent the entering and leaving ability of 26 different nucleophiles. The treatment is based on singular value decomposition (SVD) of a matrix of computed energy barriers. The current work represents the extension to a problem of reactivity of the hidden descriptor methodology that we had previously developed for the thermodynamic problem of bond dissociation energies in transition-metal complexes. The analysis of the results shows that a single descriptor is sufficient. This hidden descriptor has different values for nucleophilic and leaving abilities and, contrary to expectation, does not correlate especially well with either frontier molecular orbital descriptors or solvation descriptors. In contrast, it correlates with other thermodynamic and geometric parameters. This statistical procedure can be in principle extended to additional chemical fragments and other reactions.
    Thematic Areas: Astronomia / física Biotecnología Chemistry, organic Ciência de alimentos Ciências agrárias i Ciências biológicas i Ciências biológicas ii Ciências biológicas iii Engenharias i Engenharias ii Engenharias iv Ensino Farmacia General medicine Interdisciplinar Materiais Medicina i Medicina ii Odontología Organic chemistry Química
    licence for use: https://creativecommons.org/licenses/by/3.0/es/
    Author's mail: maria.besora@urv.cat
    Author identifier: 0000-0002-6656-5827
    Record's date: 2025-01-28
    Paper version: info:eu-repo/semantics/submittedVersion
    Paper original source: Journal Of Organic Chemistry. 87 (1): 363-372
    APA: Moran-Gonzalez, Lucia; Besora, Maria; Maseras, Feliu (2022). Seeking the Optimal Descriptor for SN2 Reactions through Statistical Analysis of Density Functional Theory Results. Journal Of Organic Chemistry, 87(1), 363-372. DOI: 10.1021/acs.joc.1c02387
    Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
    Entity: Universitat Rovira i Virgili
    Journal publication year: 2022
    Publication Type: Journal Publications
  • Keywords:

    Chemistry, Organic,Organic Chemistry
    activation
    basis-set
    cl
    computational chemistry
    kinetics
    molecular calculations
    potentials
    sn2 reactions
    thermochemistry
    Activation
    Basis-set
    Cl
    Computational chemistry
    Kinetic
    Kinetics
    Molecular calculations
    Potentials
    Sn2 reactions
    Thermochemistry
    Williamson ether synthesis
    Astronomia / física
    Biotecnología
    Chemistry, organic
    Ciência de alimentos
    Ciências agrárias i
    Ciências biológicas i
    Ciências biológicas ii
    Ciências biológicas iii
    Engenharias i
    Engenharias ii
    Engenharias iv
    Ensino
    Farmacia
    General medicine
    Interdisciplinar
    Materiais
    Medicina i
    Medicina ii
    Odontología
    Organic chemistry
    Química
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