Autor según el artículo: Puigbo, Pere; Bravo, Ignacio G.; Garcia-Vallve, Santiago;

Departamento: Bioquímica i Biotecnologia

Autor/es de la URV: Garcia Vallve, Santiago / PUIGBÒ AVALOS, PEDRO

Palabras clave: Server Prokaryotic complete genomes Papillomavirus genomes Metabolism Index Highly expressed genes Db Database Cycle Bias

Resumen: The Codon Adaptation Index (CAI) was first developed to measure the synonymous codon usage bias for a DNA or RNA sequence. The CAI quantifies the similarity between the synonymous codon usage of a gene and the synonymous codon frequency of a reference set.We describe here CAIcal, a web-server available at http://genomes.urv.es/CAIcal that includes a complete set of utilities related with the CAI. The server provides useful important features, such as the calculation and graphical representation of the CAI along either an individual sequence or a protein multiple sequence alignment translated to DNA. The automated calculation of CAI and its expected value is also included as one of the CAIcal tools. The software is also free to be downloaded as a stand alone application for local use.The CAIcal server provides a complete set of tools to assess codon usage adaptation and to help in genome annotation.

Áreas temáticas: Modeling and simulation Medicina ii Medicina i Matemática / probabilidade e estatística Immunology General biochemistry,genetics and molecular biology General agricultural and biological sciences Ecology, evolution, behavior and systematics Ciências biológicas ii Ciências biológicas i Ciência da computação Biotecnología Biology Biodiversidade Biochemistry, genetics and molecular biology (miscellaneous) Biochemistry, genetics and molecular biology (all) Astronomia / física Applied mathematics Agricultural and biological sciences (miscellaneous) Agricultural and biological sciences (all)

Acceso a la licencia de uso: https://creativecommons.org/licenses/by/3.0/es/

ISSN: 17456150

Direcció de correo del autor: santi.garcia-vallve@urv.cat

Identificador del autor: 0000-0002-0348-7497

Fecha de alta del registro: 2023-02-18

Versión del articulo depositado: info:eu-repo/semantics/publishedVersion

Enlace a la fuente original: https://biologydirect.biomedcentral.com/articles/10.1186/1745-6150-3-38

URL Documento de licencia: http://repositori.urv.cat/ca/proteccio-de-dades/

Referencia al articulo segun fuente origial: Biology Direct. 3 (38): 38-

Referencia de l'ítem segons les normes APA: Puigbo, Pere; Bravo, Ignacio G.; Garcia-Vallve, Santiago; (2008). CAIcal: A combined set of tools to assess codon usage adaptation. Biology Direct, 3(38), 38-. DOI: 10.1186/1745-6150-3-38

DOI del artículo: 10.1186/1745-6150-3-38

Entidad: Universitat Rovira i Virgili

Año de publicación de la revista: 2008

Tipo de publicación: Journal Publications