Author, as appears in the article.: Iakab SA; Sementé L; García-Altares M; Correig X; Ràfols P
Department: Enginyeria Electrònica, Elèctrica i Automàtica
URV's Author/s: Correig Blanchar, Francesc Xavier / Ràfols Soler, Pere
Keywords: Visualization Spectroscopy Software Raman imaging R Microscopy Mass spectrometry imaging Maldi-tof Imzml Converter
Abstract: © 2020 The Author(s). Background: Multimodal imaging that combines mass spectrometry imaging (MSI) with Raman imaging is a rapidly developing multidisciplinary analytical method used by a growing number of research groups. Computational tools that can visualize and aid the analysis of datasets by both techniques are in demand. Results: Raman2imzML was developed as an open-source converter that transforms Raman imaging data into imzML, a standardized common data format created and adopted by the mass spectrometry community. We successfully converted Raman datasets to imzML and visualized Raman images using open-source software designed for MSI applications. Conclusion: Raman2imzML enables both MSI and Raman images to be visualized using the same file format and the same software for a straightforward exploratory imaging analysis.
Thematic Areas: Structural biology Saúde coletiva Química Molecular biology Medicina veterinaria Medicina ii Medicina i Mathematical & computational biology Matemática / probabilidade e estatística Interdisciplinar Farmacia Engenharias iv Engenharias iii Computer science applications Ciências sociais aplicadas i Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências agrárias i Ciência da computação Biotecnología Biotechnology & applied microbiology Biodiversidade Biochemistry Biochemical research methods Applied mathematics
licence for use: https://creativecommons.org/licenses/by/3.0/es/
Author's mail: xavier.correig@urv.cat pere.rafols@urv.cat
Author identifier: 0000-0002-6902-3054 0000-0002-9240-4058
Record's date: 2023-02-19
Papper version: info:eu-repo/semantics/publishedVersion
Link to the original source: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03789-8
Papper original source: Bmc Bioinformatics. 21 (1): 448-
APA: Iakab SA; Sementé L; García-Altares M; Correig X; Ràfols P (2020). Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format. Bmc Bioinformatics, 21(1), 448-. DOI: 10.1186/s12859-020-03789-8
Licence document URL: https://repositori.urv.cat/ca/proteccio-de-dades/
Article's DOI: 10.1186/s12859-020-03789-8
Entity: Universitat Rovira i Virgili
Journal publication year: 2020
Publication Type: Journal Publications
Repositori URV