Revistes Publicacions URV: SORT - Statistics and Operations Research Transactions2017

Thirty years of progeny from Chao’s inequality: Estimating and comparing richness with incidence data and incomplete sampling

  • Datos identificativos

    Identificador:  RP:2453
    Autores:  Colwell, Robert K.; Chao, Anne
    Resumen:
    In the context of capture-recapture studies, Chao (1987) derived an inequality among capture frequency counts to obtain a lower bound for the size of a population based on individuals’ capture/non-capture records for multiple capture occasions. The inequality has been applied to obtain a non-parametric lower bound of species richness of an assemblage based on species incidence (detection/non-detection) data in multiple sampling units. The inequality implies that the number of undetected species can be inferred from the species incidence frequency counts of the uniques (species detected in only one sampling unit) and duplicates (species detected in exactly two sampling units). In their pioneering paper, Colwell and Coddington (1994) gave the name “Chao2” to the estimator for the resulting species richness. (The “Chao1” estimator refers to a similar type of estimator based on species abundance data). Since then, the Chao2 estimator has been applied to many research fields and led to fruitful generalizations. Here, we first review Chao’s inequality under various models and discuss some related statistical inference questions: (1) Under what conditions is the Chao2 estimator an unbiased point estimator? (2) How many additional sampling units are needed to detect any arbitrary proportion (including 100%) of the Chao2 estimate of asymptotic species richness? (3) Can other incidence frequency counts be used to obtain similar lower bounds? We then show how the Chao2 estimator can be also used to guide a non-asymptotic analysis in which species richness estimators can be compared for equally-large or equally-complete samples via sample-size-based and coverage-based rarefaction and extrapolation. We also review the generalization of Chao’s inequality to estimate species richness
  • Otros:

    Año de publicación de la revista: 2017
    Autor/es de la URV: Colwell, Robert K., Chao, Anne
    Tipo de publicación: info:eu-repo/semantics/publishedVersion, info:eu-repo/semantics/article
  • Palabras clave:

    Cauchy-Schwarz inequality
    Chao2 estimator
    extrapolation
    Good-Turing frequency
    formula
    incidence data
    phylogenetic diversity
    rarefaction
    sampling effort
    shared species richness
    species richness
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