Autor segons l'article: Talagrand-Reboul E., Roger F., Kimper J.L., Colston S.M., Graf J., Latif-Eugenín F., Figueras M.J., Petit F., Marchandin H., Jumas-Bilak E., Lamy B.
Departament: Ciències Mèdiques Bàsiques
Autor/s de la URV: Figueras Salvat, María Josefa
Paraules clau: aeromonas complex of species integrative taxonomy phylogeny population study recombination speciation Aeromonas Complex of species Complex of species Integrative taxonomy Phylogeny Population study Recombination Speciation Taxogenomics
Resum: Aeromonas media is an opportunistic pathogen for human and animals mainly found in aquatic habitats and which has been noted for significant genomic and phenotypic heterogeneities. We aimed to better understand the population structure and diversity of strains currently affiliated to A. media and the related species A. rivipollensis. Forty-one strains were included in a population study integrating, multilocus genetics, phylogenetics, comparative genomics, as well as phenotypics, lifestyle, and evolutionary features. Sixteen gene-based multilocus phylogeny delineated three clades. Clades corresponded to different genomic groups or genomospecies defined by phylogenomic metrics ANI (average nucleotide identity) and isDDH (in silico DNA-DNA hybridization) on 14 whole genome sequences. DL-lactate utilization, cefoxitin susceptibility, nucleotide signatures, ribosomal multi-operon diversity, and differences in relative effect of recombination and mutation (i.e., in evolution mode) distinguished the two species Aeromonas media and Aeromonas rivipollensis. The description of these two species was emended accordingly. The genome metrics and comparative genomics suggested that a third clade is a distinct genomospecies. Beside the species delineation, genetic and genomic data analysis provided a more comprehensive knowledge of the cladogenesis determinants at the root and inside A. media species complex among aeromonads. Particular lifestyles and phenotypes as well as major differences in evolution modes may represent putative factors associated with lineage emergence and speciation within the A. media complex. Finally, the integrative and populational approach presented in this study is considered broadly in order to conciliate the delineation of taxonomic species and the population structure in bacterial genera organized in species complexes.
Àrees temàtiques: Astronomia / física Biodiversidade Biotecnología Ciência da computação Ciência de alimentos Ciências agrárias i Ciências ambientais Ciências biológicas i Ciências biológicas ii Ciências biológicas iii Economia Engenharias i Engenharias ii Engenharias iii Ensino Farmacia Geociências Geografía Interdisciplinar Matemática / probabilidade e estatística Materiais Medicina i Medicina ii Medicina veterinaria Microbiology Microbiology (medical) Nutrição Odontología Química Saúde coletiva Zootecnia / recursos pesqueiros
Accès a la llicència d'ús: https://creativecommons.org/licenses/by/3.0/es/
Adreça de correu electrònic de l'autor: mariajose.figueras@urv.cat
ISSN: 1664302X
Identificador de l'autor: 0000-0002-2268-8980
Data d'alta del registre: 2023-02-22
Versió de l'article dipositat: info:eu-repo/semantics/publishedVersion
Enllaç font original: https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2017.00621/full
Referència a l'article segons font original: Frontiers In Microbiology. 8 (APR): 621-
Referència de l'ítem segons les normes APA: Talagrand-Reboul E., Roger F., Kimper J.L., Colston S.M., Graf J., Latif-Eugenín F., Figueras M.J., Petit F., Marchandin H., Jumas-Bilak E., Lamy B. (2017). Delineation of taxonomic species within complex of species: Aeromonas media and related species as a test case. Frontiers In Microbiology, 8(APR), 621-. DOI: 10.3389/fmicb.2017.00621
URL Document de llicència: http://repositori.urv.cat/ca/proteccio-de-dades/
DOI de l'article: 10.3389/fmicb.2017.00621
Entitat: Universitat Rovira i Virgili
Any de publicació de la revista: 2017
Tipus de publicació: Journal Publications
Repositori URV