Autor según el artículo: Talagrand-Reboul E., Roger F., Kimper J.L., Colston S.M., Graf J., Latif-Eugenín F., Figueras M.J., Petit F., Marchandin H., Jumas-Bilak E., Lamy B.
Departamento: Ciències Mèdiques Bàsiques
Autor/es de la URV: Figueras Salvat, María Josefa
Palabras clave: Taxogenomics Speciation Recombination Population study Phylogeny Integrative taxonomy Complex of species Complex of species Aeromonas speciation recombination population study phylogeny integrative taxonomy complex of species aeromonas
Resumen: Aeromonas media is an opportunistic pathogen for human and animals mainly found in aquatic habitats and which has been noted for significant genomic and phenotypic heterogeneities. We aimed to better understand the population structure and diversity of strains currently affiliated to A. media and the related species A. rivipollensis. Forty-one strains were included in a population study integrating, multilocus genetics, phylogenetics, comparative genomics, as well as phenotypics, lifestyle, and evolutionary features. Sixteen gene-based multilocus phylogeny delineated three clades. Clades corresponded to different genomic groups or genomospecies defined by phylogenomic metrics ANI (average nucleotide identity) and isDDH (in silico DNA-DNA hybridization) on 14 whole genome sequences. DL-lactate utilization, cefoxitin susceptibility, nucleotide signatures, ribosomal multi-operon diversity, and differences in relative effect of recombination and mutation (i.e., in evolution mode) distinguished the two species Aeromonas media and Aeromonas rivipollensis. The description of these two species was emended accordingly. The genome metrics and comparative genomics suggested that a third clade is a distinct genomospecies. Beside the species delineation, genetic and genomic data analysis provided a more comprehensive knowledge of the cladogenesis determinants at the root and inside A. media species complex among aeromonads. Particular lifestyles and phenotypes as well as major differences in evolution modes may represent putative factors associated with lineage emergence and speciation within the A. media complex. Finally, the integrative and populational approach presented in this study is considered broadly in order to conciliate the delineation of taxonomic species and the population structure in bacterial genera organized in species complexes.
Áreas temáticas: Zootecnia / recursos pesqueiros Saúde coletiva Química Odontología Nutrição Microbiology (medical) Microbiology Medicina veterinaria Medicina ii Medicina i Materiais Matemática / probabilidade e estatística Interdisciplinar Geografía Geociências Farmacia Ensino Engenharias iii Engenharias ii Engenharias i Economia Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências ambientais Ciências agrárias i Ciência de alimentos Ciência da computação Biotecnología Biodiversidade Astronomia / física
Acceso a la licencia de uso: https://creativecommons.org/licenses/by/3.0/es/
ISSN: 1664302X
Direcció de correo del autor: mariajose.figueras@urv.cat
Identificador del autor: 0000-0002-2268-8980
Fecha de alta del registro: 2024-09-07
Versión del articulo depositado: info:eu-repo/semantics/publishedVersion
Enlace a la fuente original: https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2017.00621/full
URL Documento de licencia: https://repositori.urv.cat/ca/proteccio-de-dades/
Referencia al articulo segun fuente origial: Frontiers In Microbiology. 8 (APR): 621-
Referencia de l'ítem segons les normes APA: Talagrand-Reboul E., Roger F., Kimper J.L., Colston S.M., Graf J., Latif-Eugenín F., Figueras M.J., Petit F., Marchandin H., Jumas-Bilak E., Lamy B. (2017). Delineation of taxonomic species within complex of species: Aeromonas media and related species as a test case. Frontiers In Microbiology, 8(APR), 621-. DOI: 10.3389/fmicb.2017.00621
DOI del artículo: 10.3389/fmicb.2017.00621
Entidad: Universitat Rovira i Virgili
Año de publicación de la revista: 2017
Tipo de publicación: Journal Publications
Repositori URV