Articles producció científica> Ciències Mèdiques Bàsiques

Coelomycetous Dothideomycetes with emphasis on the families Cucurbitariaceae and Didymellaceae

  • Dades identificatives

    Identificador:  imarina:4935615
    Autors:  Valenzuela-Lopez, N; Cano-Lira, J F; Guarro, J; Sutton, D A; Wiederhold, N; Crous, P W; Stchigel, A M
    Resum:
    The taxonomy of the coelomycetes has undergone dramatic changes in recent years, but remains controversial due to the high number of taxa involved, their poor morphological differentiation, the rare occurrence of the sexual morphs, and rapid loss of fertility in vitro. In the present study, we revisited the families Cucurbitariaceae and Didymellaceae (Pleosporales, Dothideomycetes), which include numerous plant pathogens, endophytic species associated with a wide host range, and saprobes. The taxonomy of two of the most relevant genera, i.e. Phoma and Pyrenochaeta, remains ambiguous after several phylogenetic studies, and needs further revision. We have studied a total of 143 strains of coelomycetes from clinical or environmental origin, by combining the LSU, ITS, tub2 and rpb2 sequences for a multi-locus analysis and a detailed morphological comparison. The resulting phylogenetic tree revealed that some fungi previously considered as members of Cucurbitariaceae represented five different families, and four of them, Neopyrenochaetaceae, Parapyrenochaetaceae, Pseudopyrenochaetaceae and Pyrenochaetopsidaceae, are proposed here as new. Furthermore, 13 new genera, 28 new species, and 20 new combinations are proposed within the Pleosporineae. Moreover, four new typifications are introduced to stabilise the taxonomy of these fungi.
  • Altres:

    Autor segons l'article: Valenzuela-Lopez, N; Cano-Lira, J F; Guarro, J; Sutton, D A; Wiederhold, N; Crous, P W; Stchigel, A M
    Departament: Ciències Mèdiques Bàsiques
    Autor/s de la URV: Cano Lira, José Francisco / Guarro Artigas, Josep / Stchigel Glikman, Alberto Miguel / VALENZUELA LÓPEZ, NICOMEDES
    Paraules clau: Xenopyrenochaetopsis valenzuela-lopez, crous, stchigel, guarro & cano; Xenopyrenochaetopsis pratorum (p.r. johnst. & boerema) valenzuela-lopez, crous, stchigel, guarro & cano; Xenodidymella saxea (aveskamp et al.) valenzuela-lopez, crous, cano, guarro & stchigel; Vacuiphoma valenzuela-lopez, cano, crous, guarro & stchigel; Vacuiphoma oculihominis valenzuela-lopez, stchigel, guarro & cano; Vacuiphoma bulgarica (aveskamp et al.) valenzuela-lopez, cano, crous, guarro & stchigel; Taxonomy; Similiphoma valenzuela-lopez, crous, cano, guarro & stchigel; Similiphoma crystallifera (gruyter et al.) valenzuela-lopez, crous, cano, guarro & stchigel; Remotididymella valenzuela-lopez, crous, cano, guarro & stchigel; Remotididymella destructiva (plowr.) valenzuela-lopez, cano, crous, guarro & stchigel; Remotididymella anthropophila valenzuela-lopez, cano, guarro & stchigel; Pyrenochaetopsis americana valenzuela-lopez, cano, guarro & stchigel; Pyrenochaetopsis; Pyrenochaetopsidaceae valenzuela-lopez, crous, cano, guarro & stchigel; Pyrenochaeta; Py. uberiformis valenzuela-lopez, cano, guarro & stchigel; Py. setosissima valenzuela-lopez, cano, crous, guarro & stchigel; Py. paucisetosa valenzuela-lopez, cano, guarro & stchigel; Py. globosa valenzuela-lopez, cano, guarro & stchigel; Py. confluens valenzuela-lopez, cano, guarro & stchigel; Py. botulispora valenzuela-lopez, cano, guarro & stchigel; Pseudopyrenochaetaceae valenzuela-lopez, crous, stchigel, guarro & cano; Pseudopyrenochaeta valenzuela-lopez, crous, stchigel, guarro & cano; Pseudopyrenochaeta terrestris valenzuela-lopez, crous, cano, guarro & stchigel; Pseudopyrenochaeta lycopersici (r.w. schneid. & gerlach) valenzuela-lopez, crous, stchigel, guarro & cano; Pleosporineae; Pleosporales; Phoma; Parapyrenochaetaceae valenzuela-lopez, crous, stchigel, guarro & cano; Parapyrenochaeta valenzuela-lopez, crous, stchigel, guarro & cano; Parapyrenochaeta acaciae (crous et al.) valenzuela-lopez, crous, stchigel, guarro & cano; Parapy. protearum (crous) valenzuela-lopez, crous, stchigel, guarro & cano; Paracucurbitaria valenzuela-lopez, stchigel, guarro & cano; Paracucurbitaria italica valenzuela-lopez, crous, stchigel, guarro & cano; Paracucurbitaria corni (bat. & a.f. vital) valenzuela-lopez, stchigel, guarro & cano; Nothophoma variabilis valenzuela-lopez, cano, guarro & stchigel; New taxa; Neopyrenochaetopsis valenzuela-lopez, cano, guarro & stchigel; Neopyrenochaetopsis hominis valenzuela-lopez, cano, guarro & stchigel; Neopyrenochaetaceae valenzuela-lopez, crous, cano, guarro & stchigel; Neopyrenochaeta valenzuela-lopez, crous, stchigel, guarro & cano; Neopyrenochaeta fragariae valenzuela-lopez, crous, stchigel, guarro & cano; Neopyrenochaeta acicola (moug. & lév.) valenzuela-lopez, crous, stchigel, guarro & cano; Neopy. telephoni (rohit sharma et al.) valenzuela-lopez, crous, stchigel, guarro & cano; Neopy. inflorescentiae (crous et al.) valenzuela-lopez, crous, stchigel, guarro & cano; Neocucurbitaria cava (schulzer) valenzuela-lopez, crous, stchigel, guarro & cano; Neocucurbitaria aquatica valenzuela-lopez, crous, stchigel, guarro & cano; Neocu. keratinophila (verkley et al.) valenzuela-lopez, stchigel, guarro & cano; Neocu. irregularis valenzuela-lopez, cano, guarro & stchigel; Neocu. hakeae (crous) valenzuela-lopez, crous, stchigel, guarro & cano; Neoascochyta cylindrispora valenzuela-lopez, cano, guarro & stchigel; Neoa. tardicrescens valenzuela-lopez, cano, crous, guarro & stchigel; Multigene phylogeny; Juxtiphoma valenzuela-lopez, cano, crous, guarro & stchigel; Juxtiphoma eupyrena (sacc.) valenzuela-lopez, cano, crous, guarro & stchigel; Epicoccum proteae (crous) valenzuela-lopez, stchigel, crous, guarro & cano; Epicoccum catenisporum valenzuela-lopez, stchigel, crous, guarro & cano; Ep. pneumoniae valenzuela-lopez, stchigel, guarro & cano; Ep. ovisporum valenzuela-lopez, stchigel, crous, guarro & cano; Ep. keratinophilum valenzuela-lopez, cano, guarro & stchigel; Ectophoma valenzuela-lopez, cano, crous, guarro & stchigel; Ectophoma multirostrata (p.n. mathur et al.) valenzuela-lopez, cano, crous, guarro & stchigel; Ec. pomi (horne) valenzuela-lopez, cano, crous, guarro & stchigel; Didymellaceae; Didymella brunneospora valenzuela-lopez, cano, crous, guarro & stchigel; D. keratinophila valenzuela-lopez, cano, guarro & stchigel; Cumuliphoma valenzuela-lopez, stchigel, crous, guarro & cano; Cumuliphoma omnivirens (aveskamp et al.) valenzuela-lopez, stchigel, crous, guarro & cano; Cumuliphoma indica valenzuela-lopez, cano, crous, guarro & stchigel; Cucurbitariaceae; Cu. pneumoniae valenzuela-lopez, stchigel, crous, guarro & cano; Allophoma cylindrispora valenzuela-lopez, cano, guarro & stchigel; Allocucurbitaria valenzuela-lopez, stchigel, guarro & cano; Allocucurbitaria botulispora valenzuela-lopez, stchigel, guarro & cano
    Resum: The taxonomy of the coelomycetes has undergone dramatic changes in recent years, but remains controversial due to the high number of taxa involved, their poor morphological differentiation, the rare occurrence of the sexual morphs, and rapid loss of fertility in vitro. In the present study, we revisited the families Cucurbitariaceae and Didymellaceae (Pleosporales, Dothideomycetes), which include numerous plant pathogens, endophytic species associated with a wide host range, and saprobes. The taxonomy of two of the most relevant genera, i.e. Phoma and Pyrenochaeta, remains ambiguous after several phylogenetic studies, and needs further revision. We have studied a total of 143 strains of coelomycetes from clinical or environmental origin, by combining the LSU, ITS, tub2 and rpb2 sequences for a multi-locus analysis and a detailed morphological comparison. The resulting phylogenetic tree revealed that some fungi previously considered as members of Cucurbitariaceae represented five different families, and four of them, Neopyrenochaetaceae, Parapyrenochaetaceae, Pseudopyrenochaetaceae and Pyrenochaetopsidaceae, are proposed here as new. Furthermore, 13 new genera, 28 new species, and 20 new combinations are proposed within the Pleosporineae. Moreover, four new typifications are introduced to stabilise the taxonomy of these fungi.
    Àrees temàtiques: Plant science; Mycology; Interdisciplinar; Ciências biológicas iii; Ciências agrárias i; Biotecnología; Agricultural and biological sciences (miscellaneous)
    Accès a la llicència d'ús: https://creativecommons.org/licenses/by/3.0/es/
    ISSN: 01660616
    Adreça de correu electrònic de l'autor: albertomiguel.stchigel@urv.cat; jose.cano@urv.cat
    Data d'alta del registre: 2025-01-04
    Versió de l'article dipositat: info:eu-repo/semantics/publishedVersion
    Enllaç font original: https://www.ingentaconnect.com/content/wfbi/sim/2018/00000090/00000001/art00002#
    URL Document de llicència: https://repositori.urv.cat/ca/proteccio-de-dades/
    Referència a l'article segons font original: Studies In Mycology. 90 (90): 1-69
    Referència de l'ítem segons les normes APA: Valenzuela-Lopez, N; Cano-Lira, J F; Guarro, J; Sutton, D A; Wiederhold, N; Crous, P W; Stchigel, A M (2018). Coelomycetous Dothideomycetes with emphasis on the families Cucurbitariaceae and Didymellaceae. Studies In Mycology, 90(90), 1-69. DOI: 10.1016/j.simyco.2017.11.003
    DOI de l'article: 10.1016/j.simyco.2017.11.003
    Entitat: Universitat Rovira i Virgili
    Any de publicació de la revista: 2018
    Tipus de publicació: Journal Publications
  • Paraules clau:

    Agricultural and Biological Sciences (Miscellaneous),Mycology,Plant Science
    Xenopyrenochaetopsis valenzuela-lopez, crous, stchigel, guarro & cano
    Xenopyrenochaetopsis pratorum (p.r. johnst. & boerema) valenzuela-lopez, crous, stchigel, guarro & cano
    Xenodidymella saxea (aveskamp et al.) valenzuela-lopez, crous, cano, guarro & stchigel
    Vacuiphoma valenzuela-lopez, cano, crous, guarro & stchigel
    Vacuiphoma oculihominis valenzuela-lopez, stchigel, guarro & cano
    Vacuiphoma bulgarica (aveskamp et al.) valenzuela-lopez, cano, crous, guarro & stchigel
    Taxonomy
    Similiphoma valenzuela-lopez, crous, cano, guarro & stchigel
    Similiphoma crystallifera (gruyter et al.) valenzuela-lopez, crous, cano, guarro & stchigel
    Remotididymella valenzuela-lopez, crous, cano, guarro & stchigel
    Remotididymella destructiva (plowr.) valenzuela-lopez, cano, crous, guarro & stchigel
    Remotididymella anthropophila valenzuela-lopez, cano, guarro & stchigel
    Pyrenochaetopsis americana valenzuela-lopez, cano, guarro & stchigel
    Pyrenochaetopsis
    Pyrenochaetopsidaceae valenzuela-lopez, crous, cano, guarro & stchigel
    Pyrenochaeta
    Py. uberiformis valenzuela-lopez, cano, guarro & stchigel
    Py. setosissima valenzuela-lopez, cano, crous, guarro & stchigel
    Py. paucisetosa valenzuela-lopez, cano, guarro & stchigel
    Py. globosa valenzuela-lopez, cano, guarro & stchigel
    Py. confluens valenzuela-lopez, cano, guarro & stchigel
    Py. botulispora valenzuela-lopez, cano, guarro & stchigel
    Pseudopyrenochaetaceae valenzuela-lopez, crous, stchigel, guarro & cano
    Pseudopyrenochaeta valenzuela-lopez, crous, stchigel, guarro & cano
    Pseudopyrenochaeta terrestris valenzuela-lopez, crous, cano, guarro & stchigel
    Pseudopyrenochaeta lycopersici (r.w. schneid. & gerlach) valenzuela-lopez, crous, stchigel, guarro & cano
    Pleosporineae
    Pleosp
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