Autor segons l'article: Satta, G.; Atzeni, A.; McHugh, T. D.;
Departament: Bioquímica i Biotecnologia
Autor/s de la URV: Atzeni, Alessandro
Paraules clau: Whole genome sequencing Rapid susceptibility testing Phylogenetic analysis Outbreak Online tools Mycobacterium tuberculosis Diagnosis Cultures Antibiotic-resistance rapid susceptibility testing phylogenetic analysis online tools mycobacterium tuberculosis
Resum: Whole genome sequencing (WGS) has the potential to revolutionize the diagnosis of Mycobacterium tuberculosis infection but the lack of bioinformatic expertise among clinical microbiologists is a barrier for adoption. Software products for analysis should be simple, free of charge, able to accept data directly from the sequencer (FASTQ files) and to provide the basic functionalities all-in-one. The main aim of this narrative review is to provide a practical guide for the clinical microbiologist, with little or no practical experience of WGS analysis, with a specific focus on software products tailor-made for M. tuberculosis analysis. With sequencing performed by an external provider, it is now feasible to implement WGS analysis in the routine clinical practice of any microbiology laboratory, with the potential to detect resistance weeks before traditional phenotypic culture methods, but the clinical microbiologist should be aware of the limitations of this approach. (C) 2016 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.
Àrees temàtiques: Saúde coletiva Química Odontología Microbiology (medical) Microbiology Medicine (miscellaneous) Medicina veterinaria Medicina iii Medicina ii Medicina i Interdisciplinar Infectious diseases Farmacia Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências ambientais Ciências agrárias i Biotecnología Astronomia / física
Accès a la llicència d'ús: https://creativecommons.org/licenses/by/3.0/es/
Adreça de correu electrònic de l'autor: alessandro.atzeni@urv.cat alessandro.atzeni@urv.cat
ISSN: 1198743X
Identificador de l'autor: 0000-0002-1804-8606 0000-0002-1804-8606
Data d'alta del registre: 2023-05-14
Versió de l'article dipositat: info:eu-repo/semantics/acceptedVersion
Referència a l'article segons font original: Clinical Microbiology And Infection. 23 (2): 69-72
Referència de l'ítem segons les normes APA: Satta, G.; Atzeni, A.; McHugh, T. D.; (2017). Mycobacterium tuberculosis and whole genome sequencing: a practical guide and online tools available for the clinical microbiologist. Clinical Microbiology And Infection, 23(2), 69-72. DOI: 10.1016/j.cmi.2016.09.005
URL Document de llicència: https://repositori.urv.cat/ca/proteccio-de-dades/
Entitat: Universitat Rovira i Virgili
Any de publicació de la revista: 2017
Tipus de publicació: Journal Publications
Repositori URV