Autor segons l'article: Alexandra Iakab, Stefania; Semente, Lluc; Garcia-Altares, Maria; Correig, Xavier; Rafols, Pere
Departament: Enginyeria Electrònica, Elèctrica i Automàtica
Autor/s de la URV: Correig Blanchar, Francesc Xavier / Garcia-Altares Pérez, Maria / Ràfols Soler, Pere
Paraules clau: Visualization Spectrum analysis, raman Spectroscopy Software Reference standards Raman imaging R Molecular imaging Microscopy Mass spectrometry imaging Mass spectrometry Maldi-tof Imzml Image processing, computer-assisted Converter
Resum: © 2020 The Author(s). Background: Multimodal imaging that combines mass spectrometry imaging (MSI) with Raman imaging is a rapidly developing multidisciplinary analytical method used by a growing number of research groups. Computational tools that can visualize and aid the analysis of datasets by both techniques are in demand. Results: Raman2imzML was developed as an open-source converter that transforms Raman imaging data into imzML, a standardized common data format created and adopted by the mass spectrometry community. We successfully converted Raman datasets to imzML and visualized Raman images using open-source software designed for MSI applications. Conclusion: Raman2imzML enables both MSI and Raman images to be visualized using the same file format and the same software for a straightforward exploratory imaging analysis.
Àrees temàtiques: Structural biology Saúde coletiva Química Molecular biology Medicina veterinaria Medicina ii Medicina i Mathematical & computational biology Matemática / probabilidade e estatística Interdisciplinar Farmacia Engenharias iv Engenharias iii Computer science applications Ciências sociais aplicadas i Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências agrárias i Ciência da computação Biotecnología Biotechnology & applied microbiology Biodiversidade Biochemistry Biochemical research methods Applied mathematics
Accès a la llicència d'ús: https://creativecommons.org/licenses/by/3.0/es/
Adreça de correu electrònic de l'autor: maria.garcia-altares@urv.cat pere.rafols@urv.cat xavier.correig@urv.cat
Identificador de l'autor: 0000-0002-9240-4058 0000-0002-6902-3054
Data d'alta del registre: 2025-01-28
Versió de l'article dipositat: info:eu-repo/semantics/publishedVersion
URL Document de llicència: https://repositori.urv.cat/ca/proteccio-de-dades/
Referència a l'article segons font original: Bmc Bioinformatics. 21 (1): 448-
Referència de l'ítem segons les normes APA: Alexandra Iakab, Stefania; Semente, Lluc; Garcia-Altares, Maria; Correig, Xavier; Rafols, Pere (2020). Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format. Bmc Bioinformatics, 21(1), 448-. DOI: 10.1186/s12859-020-03789-8
Entitat: Universitat Rovira i Virgili
Any de publicació de la revista: 2020
Tipus de publicació: Journal Publications
Repositori URV