Autor según el artículo: Iakab SA; Sementé L; García-Altares M; Correig X; Ràfols P

Departamento: Enginyeria Electrònica, Elèctrica i Automàtica

Autor/es de la URV: Correig Blanchar, Francesc Xavier / Ràfols Soler, Pere

Palabras clave: Visualization Spectroscopy Software Raman imaging R Microscopy Mass spectrometry imaging Maldi-tof Imzml Converter

Resumen: © 2020 The Author(s). Background: Multimodal imaging that combines mass spectrometry imaging (MSI) with Raman imaging is a rapidly developing multidisciplinary analytical method used by a growing number of research groups. Computational tools that can visualize and aid the analysis of datasets by both techniques are in demand. Results: Raman2imzML was developed as an open-source converter that transforms Raman imaging data into imzML, a standardized common data format created and adopted by the mass spectrometry community. We successfully converted Raman datasets to imzML and visualized Raman images using open-source software designed for MSI applications. Conclusion: Raman2imzML enables both MSI and Raman images to be visualized using the same file format and the same software for a straightforward exploratory imaging analysis.

Áreas temáticas: Structural biology Saúde coletiva Química Molecular biology Medicina veterinaria Medicina ii Medicina i Mathematical & computational biology Matemática / probabilidade e estatística Interdisciplinar Farmacia Engenharias iv Engenharias iii Computer science applications Ciências sociais aplicadas i Ciências biológicas iii Ciências biológicas ii Ciências biológicas i Ciências agrárias i Ciência da computação Biotecnología Biotechnology & applied microbiology Biodiversidade Biochemistry Biochemical research methods Applied mathematics

Acceso a la licencia de uso: https://creativecommons.org/licenses/by/3.0/es/

Direcció de correo del autor: xavier.correig@urv.cat pere.rafols@urv.cat

Identificador del autor: 0000-0002-6902-3054 0000-0002-9240-4058

Fecha de alta del registro: 2023-02-19

Versión del articulo depositado: info:eu-repo/semantics/publishedVersion

Enlace a la fuente original: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03789-8

URL Documento de licencia: http://repositori.urv.cat/ca/proteccio-de-dades/

Referencia al articulo segun fuente origial: Bmc Bioinformatics. 21 (1): 448-

Referencia de l'ítem segons les normes APA: Iakab SA; Sementé L; García-Altares M; Correig X; Ràfols P (2020). Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format. Bmc Bioinformatics, 21(1), 448-. DOI: 10.1186/s12859-020-03789-8

DOI del artículo: 10.1186/s12859-020-03789-8

Entidad: Universitat Rovira i Virgili

Año de publicación de la revista: 2020

Tipo de publicación: Journal Publications